ReLeaf · the big picture, V3  standalone build, drawn on the wiki’s own tokens

The big picture

Three parts, and the joints between them.

Green light is meant to switch the cells on, the reactor keeps them in, and the protectant is what they are built to make. Each pair of them shares one mechanism, named between them. Point at anything to see what it touches.

Optogenetic control

Engineering →

A green-light switch built into B. subtilis.

  • Four Level 1 modules built and sequenced
  • Light array on 520 and 660 nm LEDs, six conditions

No induction run exists anywhere, so the switch is still design intent.

The array and the vessel

Green light on one side, the vessel’s own telemetry at 1 Hz on the other. The reactor’s lamp is not built, and the loop has never closed.

Bioreactor

Hardware →

A vessel that grows the cells and holds them.

  • 0.2 µm hollow fibre, 150 cm², eight fibres
  • 2 132 readings over 336 h, no sample drawn

The membrane and the photometer have never run as one machine.

Cells stay, protein leaves

One 0.2 µm pore holds the rods in and is wide enough to pass a 37.6 kDa enzyme. Shell fluid plated clean on 6 June; nothing has been measured crossing.

Bioprotectant

Peptide design →

Three molecules: ACC deaminase, LEA14 and BoPep4.

  • Six BoPep4 cassettes ordered, N-terminal tags
  • Nine 30 ns trajectories, no affinity measured

No protectant has been measured leaving a cell, and the blot found none in the prep.

The switch and the cargo

The promoter the light drives and the protectant it makes are one plasmid, sequenced with no mutations. It has never been induced.

Plant protection

The three parts are for this: a root that survives salt.

75.0 34.8 11.0 1.8
Root length in mm at 0, 75, 100 and 150 mM NaCl.
Four single readings, 3 August.

No protectant has rescued a plant yet.

Three parts are built and measured. One joint is real in DNA, one in hardware, and the third is still on paper: the reactor has no lamp of its own. Not one has been measured working, and a rust mark says where.

The long version, twenty-nine pieces of work →