Case 2 · Reports 04 Quality and 05 Biosafety

Impossible Foods
leghemoglobin.

Leghemoglobin is the soybean protein that makes the Impossible Burger look and taste like meat. The company makes it in engineered yeast, Pichia pastoris. Its first FDA filing stalled. The second one is the clearest public example of a specification and safety dossier for a protein made by a microbe.

Figure 1 · What leghemoglobin is, and why anyone wants it

A soybean protein that carries a heme. The heme is red, and heme is a large part of what makes cooked meat taste of meat.

Where it comes from

pink inside = leghemoglobin soybean root

Soybean roots grow nodules that house nitrogen-fixing bacteria. The plant makes leghemoglobin there to control oxygen around them. Cut a working nodule open and it is pink, which is the protein.

What it is

Fe one heme, held inside a cage of helices

A globin: a small protein folded into helices around one heme group. The same architecture as the haemoglobin in blood and the myoglobin in muscle, which is why it behaves like a meat protein in a pan.

The part that matters

Heme b · C₃₄H₃₂FeN₄O₄. An iron atom held in a flat ring. Extracting enough of it from plants is impractical, so the protein is made in yeast instead: 16 copies of the soybean gene, plus 8 of the yeast's own heme-pathway genes turned up.

Heme b structure drawn from the PubChem record (CID 4973), with formula and InChIKey checked against it. The globin drawing is a schematic of the fold — helices around one heme — and not a depiction of a solved structure. In the heme drawing the iron is shown coordinated at the centre of the ring, which is how it sits inside the protein. Gene copy numbers from GRAS Notice 737.

The dossier in four numbers

FDA accepted the second filing, GRN 737, in July 2018. These four numbers carry most of its argument.

≥65%

Minimum share of total protein that must be leghemoglobin. Five lots measured 71–86%.

Report 04 · GRN 737
5 lots

Independent production runs tested against every line of the specification.

Report 04 · GRN 737
~112×

Highest dose with no adverse effect in rats, divided by the 90th-percentile human intake.

Report 05 · Fraser 2018
0 cells

Viable production strain in the product: not detected. No antibiotic-resistance genes in the strain.

Report 05 · GRN 737

Why the first filing stalled

The protein is made inside the yeast. To get it out, the cells are broken open, so everything else the yeast makes comes along. The first filing described leghemoglobin well and said little about the rest.

  1. Sep 2014 · GRN 540 filed. Leghemoglobin as a flavour, up to 1.4% of the product.
  2. 2015 · FDA reviewers question the safety argument. Press reports later describe more than 40 other yeast proteins making up as much as a quarter of the ingredient, none of them characterised.
  3. Nov 2015 · Impossible Foods withdraws the filing.
  4. Oct 2017 · GRN 737 filed with a purity floor, an analysis of the 17 most abundant yeast proteins, and rat feeding studies. Six amendments follow.
  5. Jul 2018 · FDA replies with "no questions", the outcome a GRAS notice aims for.
  6. Aug 2019 · Separate approval as a colour additive, because the red colour of raw meat analogue counts as colouring. FDA adds the ≥65% purity minimum to the law itself (21 CFR 73.520).
  7. 2019–21 · Center for Food Safety objects and sues. FDA denies the objections; the Ninth Circuit upholds the approval in May 2021.

The 2015 FDA memos are known only through press reports of documents released under freedom-of-information requests. Every other date is from FDA and court documents.

Figure 2 · Why the host proteins were the problem

The route from fermenter to ingredient, with the step that creates the whole regulatory question marked.

Impossible Foods process: fermentation, bead mill, centrifuge and microfiltration, ultrafiltration, then the frozen leghemoglobin preparation. Fed-batch fermentation yeast grown on glycerol, then induced with methanol Bead mill cells broken open — everything inside comes out Centrifuge + microfiltration cells and insoluble material removed Ultrafiltration protein concentrated, salt and ascorbate added LegH Prep frozen liquid, 6–9% leghemoglobin The protein is made inside the cell, so getting it out means destroying the cell. This step is why host proteins stay in the product and why the first FDA filing stalled.
Leghemoglobin accumulates inside the yeast, so the cells have to be broken to release it. Everything else inside them comes out at the same time, which is why the specification needs a purity floor and why the first filing stalled. ReLeaf is the other case: our enzyme is secreted and crosses a membrane, so the cells are never opened.

Report 04: the specification

An excerpt of Table 1 in GRN 737. Each row has four parts: what is measured, the limit, how it was measured, and what five real lots gave. This is the layout to copy.

PropertyLimitMethodResult, 5 lots
Leghemoglobin, % w/w6–9%UPLC6.28–6.95%
Purity, % of total protein≥65%SDS-PAGE, Coomassie, densitometry71, 77, 82, 85, 86%
Solids≤24%—12.6–18.4%
pH6.5–8.5—6.77–7.38
Lead (Pb)<0.4 ppm—all <0.01
Arsenic (As)<0.05 ppm—≤0.01
Aerobic plate count<10⁴ CFU/gAOAC 990.12<10
SalmonellaabsentAOAC 2011.03absent
Production strain, viablenot detected—not detected

Values read from the scanned GRN 737 notice (pp. 8–9) and checked against FDA's response letter, which confirms the 6–9%, ≥65% and lead limits. A dash means our reading of the notice found no method named on that row; check the scanned page before quoting. The release rule underneath the table: any lot that fails any line is discarded and the cause is investigated.

Figure 3 · Five lots against one specification

A specification is only believable with real batch results beside it. This is the layout to copy.

Leghemoglobin made up 71 to 86 percent of total protein across five lots, against a specification of at least 65 percent. specification ≥65% Lot 1 71% Lot 2 77% Lot 3 82% Lot 4 85% Lot 5 86% 0% 25% 50% 65% 75% 100%

LeghemoglobinResidual host protein

Leghemoglobin as a share of total protein in five independent production lots, measured by SDS-PAGE with densitometry. Every lot clears the ≥65% floor with room to spare. The orange remainder is residual yeast protein, stated rather than hidden.
Show the numbers
LotLeghemoglobin, % of total proteinSpecification
Lot 171%≥65%
Lot 277%≥65%
Lot 382%≥65%
Lot 485%≥65%
Lot 586%≥65%

How to write it

WeakThe leghemoglobin preparation is highly pure and free of contaminants.

"Highly pure" has no limit and no method. "Free of contaminants" is untestable, because nobody can test for every contaminant.

StrongLeghemoglobin made up 71–86% of total protein across five independent lots (specification ≥65%, SDS-PAGE with densitometry). The remaining protein is from the yeast host; its 17 most abundant proteins were identified and screened against allergen databases.

Range, n, limit, method, and a plain statement of what the rest of the material is.

Report 05: safety and containment

The safety argument is one chain of arithmetic. Anyone can redo it from the notice, which is why it persuades.

1 · Use

25 g of burger a day × 0.8% leghemoglobin = 200 mg/day.

2 · Heavy eaters

90th percentile taken as twice the mean: 400 mg/day ÷ 60 kg = 6.67 mg/kg/day.

3 · Rat study

28-day feeding, no adverse effect at the top dose: 750 mg/kg/day leghemoglobin.

4 · Compare

750 ÷ 100 safety factor = 7.5 mg/kg/day allowed, above the 6.67 eaten.

From GRN 737 Tables 2–3 and Fraser et al. 2018. A later 90-day study (Reyes et al. 2023) found no adverse effect at the highest dose either. The 2019 colour additive petition used newer intake data with higher numbers; do not mix the two sets.

Figure 4 · The safety argument in one line

Three numbers on a log scale. Anyone can redo the arithmetic from the notice, which is why it persuades.

On a logarithmic scale, estimated intake is 6.67, the allowed daily intake 7.5, and the no-adverse-effect dose in rats 750 milligrams per kilogram per day. 1 10 100 1000 mg per kg body weight per day (log scale) about 112× margin 6.67 Eaten · 90th pct 7.5 Allowed · NOAEL ÷ 100 750 No effect in rats
The gap between what people eat and what harmed no rats is about 112-fold. Note how close the two left-hand marks sit: the allowed intake is only slightly above the estimated one, because the safety factor of 100 is applied to the rat dose first.
Show the numbers
QuantityValueWhere it comes from
Estimated intake, 90th percentile6.67 mg/kg/day25 g burger per day at 0.8%, doubled, over 60 kg
Acceptable daily intake7.5 mg/kg/dayNOAEL ÷ 100
No-adverse-effect level, rats750 mg/kg/day28-day dietary study, top dose

What the dossier says about the organism

Strain

Host strain from a known safe lineage. Eight of the yeast's own heme-pathway genes boosted, plus 16 copies of the soybean gene. Whole genome sequenced; stable for 150–200 generations without selection; no antibiotic-resistance genes.

Product

Cells are broken by bead mill, then removed by centrifugation and microfiltration; ultrafiltration concentrates the protein. Viable strain: not detected. Residual yeast DNA: about 0.2 mg/L, measured and stated.

How to write it

WeakOur system is biosafe because the engineered cells cannot escape.

"Cannot" is a promise. A reviewer will ask what was tested, how often, and what the detection limit was.

StrongThe production strain was not detected in any of five product lots by plating. The strain carries no antibiotic-resistance genes, and residual host DNA in the product is about 0.2 mg/L.

A test, a result, a count, and the leftovers stated as a number.

What ReLeaf takes from this

Our product, ACC deaminase, is secreted through a 0.2 µm membrane, so we never break cells open. That helps with host proteins. It does not prove containment: small vesicles and debris pass a 0.2 µm pore, and hollow fibres can develop pinholes.

PropertyLimitMethodOur result
Identityband at 37.6 kDa (mature); 41.9 kDa means unprocessedanti-His Western, shell and lumenfrom the blot record
Concentrationto be setELISA (planned)not yet measured
Enzyme activityto be setACC deaminase assay, α-ketobutyratefill in or "not yet measured"
Viable cells in shell fluidno growth100 µL plated on LB, every sample pointx of y plates clean
Antibiotic-resistance genesstate themplasmid mapname the marker on pSTK-Exp1

This is the starting table for the Product specification section. The Bioreactor Report builder has the same rows.

Sources

  1. FDA. Response letter to GRAS Notice 737, 23 Jul 2018. fda.gov/media/116243
  2. Impossible Foods. GRAS Notice 737, soy leghemoglobin preparation from Pichia pastoris (scanned PDF). fda.gov/media/124351
  3. FDA GRAS Notice Inventory, GRN 540 (closed 10 Nov 2015). hfpappexternal.fda.gov
  4. Listing of Color Additives Exempt From Certification; Soy Leghemoglobin. 84 FR 37573, 1 Aug 2019. govinfo.gov
  5. Response to objections and lifting of stay. 84 FR 69620, 19 Dec 2019. govinfo.gov
  6. Fraser RZ et al. 2018. Safety evaluation of soy leghemoglobin protein preparation derived from Pichia pastoris. Int J Toxicol 37:241. doi:10.1177/1091581818766318
  7. Jin Y et al. 2018. Soybean leghemoglobin and the 17 most abundant Pichia proteins: bioinformatic allergenicity assessment. Mol Nutr Food Res 62:1700297. doi:10.1002/mnfr.201700297
  8. Reyes TF et al. 2023. 90-day dietary study of soy leghemoglobin preparation in rats. J Toxicol 2023:7398724. doi:10.1155/2023/7398724
  9. Center for Food Safety v. FDA, No. 20-70747 (9th Cir., 3 May 2021). findlaw.com
  10. Food Dive, 2017. FDA calls Impossible Burger's secret ingredient into question (press report on the 2015 memos). fooddive.com